Leaching losses of nitrogen from a clay soil under grass and cereal crops in Finland

Summary A 16-plot experimental field was established in 1975 on a clay soil in Jokioinen, Finland. The water discharge through tile drains was measured and its ammonium and nitrate N contents determined for each plot separately. The surface runoff was also measured and analysed. The annual runoff and the N leached from the surface of moderately fertilized (100 kg/ha/y N) cereal plots varied during 1976–1982 from 21 to 301 mm and from 2 to 7 kg/ha, respectively. The discharge of water and leaching of N through subdrains varied from 65 to 225 mm and from 1 to 38 kg/ha, respectively. The highest leaching was probably caused by a previous fallow. The annual N uptake by the crop varied between 41 and 122 kg/ha.Of the fertilizer-N used for cereals, 20% of that applied in the autumn was lost, but only 1 to 4 per cent was lost when applied in the spring. There was much less N leaching from ley than from barley plots, although the former was given twice as much N. The rate of N fertilization had only a very slight effect on N leaching from both ley and barley plots.The results were compared with those obtained in lysimeters filled with clay, silt, sand and peat soils. No definite conclusions can be drawn because the lysimeter experimental data are only for the first year.     

Structure-activity studies of a macrocyclic peptide inhibitor of histone lysine demethylase 4A

The combination of genetic code reprogramming and mRNA display is a powerful approach for the identification of macrocyclic peptides with high affinities to a target of interest. We have previously used such an approach to identify a potent inhibitor (CP2) of the human KDM4A and KDM4C lysine demethylases; important regulators of gene expression. In the present study, we have used genetic code reprogramming to synthesise very high diversity focused libraries (>10¹² compounds) based on CP2 and, through affinity screening, used these to delineate the structure activity relationship of CP2 binding to KDM4A. In the course of these experiments we identified a CP2 analogue (CP2f-7) with ～4-fold greater activity than CP2 in in vitro inhibition assays. This work will facilitate the development of more potent, selective inhibitors of lysine demethylases.     

Dynamic role of “illite-like” clay minerals in temperate soils: facts and hypotheses

Analysis of new data and reinterpretation of published information for clay minerals found in temperate climate soil profiles indicates that there is often a gradient of “illite-like” clay minerals with depth. We used the term “illite-like” because these observations are based on X-Ray Diffractogram patterns and not on layer charge measurements which allow to define properly illite. It appears that “illite-like” layers are concentrated in the upper, organic - rich portion of the soil profile both under grassland and forest vegetation. “Illite-like” layer quantity seems directly related to soil potassium status. Indeed, intensive agriculture practises without potassium fertilization reduce “illite-like” content in surface soils, whereas several years of potassic fertilization without plant growth can increase “illite-like” content. The potassic soil clay mineral, illite, is particularly important in that it can be the major source of readily available potassium for plants. Spatial and temporal dynamics of clay minerals should be related to the potassium cycle. We propose that the frequently observed general trend of increasing exchangeable potassium in the top soil can be correlated with an increase in “illite-like” in the clays and that the decrease of potassium caused by intensive agricultural practices leads to “illite-like” layer destabilization. This vision of “illite-like” layer as a potassium reservoir refueled by plants and emptied by intensive cropping renews the concept of potassium availability and indicates a need to be discussed as well in natural ecosystems as in cultivated ecosystems.     

Influence of suspended clay on phosphorus uptake by periphyton

We investigated the effect of suspended clay upon the phosphorus uptake rate exhibited by lotic periphyton communities. Suspended inorganic clays and periphyton are common to aquatic environments, and both can strongly influence physical and chemical water conditions. We used replicated artificial stream channels to test the prediction that suspended clay particles would affect the uptake of soluble reactive phosphorus (SRP) by periphyton. Commercially available kaolinite and bentonite clays were characterized for their aqueous suspension behavior and affinities for SRP. Periphyton was grown in a recirculating stream system and subjected to simultaneous suspended clay and SRP additions. SRP removal from solution, both in the presence and absence of suspended clays, was used to quantify SRP uptake parameters by periphyton. Clay type and concentrations of 20, 80, and 200 mg l⁻¹ had no significant effect upon SRP uptake rate exhibited by periphyton during three 90-min experiments. Less than 1% of SRP removal was attributable to the suspended clay load or artificial stream construction materials, based on clay isotherm data and material sorption studies, indicating that 99% of SRP removal was attributable to biotic uptake. Removal of SRP (as KH₂PO₄) was described by a first-order equation with rate constants ranging between 0.02 and 0.14 min⁻¹. Our results suggest that high turbidity conditions caused by suspended mineral clays have little immediate effect upon SRP removal from the water column by periphyton. Handling editor: D. Ryder     

Sediment (grain size and clay mineralogy) and organic matter quality control on living benthic foraminifera

The paleoecological interpretation of fossil foraminiferal assemblages depends on an understanding of the ecological processes operating at the present. This study investigates both the quality of organic matter (OM) by elemental analysis as well as the sediment grain size and clay mineralogy to understand their relative influence on distribution and abundance of benthic foraminifera. This study is carried out on 15 samples regularly spaced from the mudflat to the tidal marsh. The results indicate that grain size is the most limiting parameter. Living (stained) benthic foraminiferal density and species richness are both very low within coarser sediments. OM is the second limiting factor. The density of foraminifera is the lowest and the species richness is the highest with the lowest organic carbon (C_org) contents and C/N < 12. Conversely, when the C_org is very high and C/N > 12, the density is high and the species richness medium. A high smectite proportion within the clay-size fraction seems to favor the development of Miliammina fusca. Trochammina inflata and Jadammina macrescens are both favored by an increase of organic carbon proportion but Trochammina inflata preferentially feeds on algal-derived OM when compared with Jadammina macrescens.     

Siderophore sorption to clays

Siderophores are low molecular weight organic ligands exuded by some aerobic organisms and plants to acquire Fe under Fe-limited conditions. The hydroxamate siderophores may sorb to aluminosilicate clays through a variety of mechanisms depending upon the nature of the clay and of the siderophore along with solution conditions such as pH, ionic strength, and presence of metal cations. They may also affect metal binding to clays. Here, we review previous studies of siderophore sorption to aluminosilicate clays; briefly discuss how the techniques of X-ray diffractometry, Fourier-transform infrared spectroscopy, and X-ray absorption spectroscopy may be applied to such studies; review effects of siderophores on metal sorption to clays; and highlight some areas for future research.     

Rare, threatened and alien species in the gastropod communities in the clay pit ponds in relation to the environmental factors (The Ciechanowska Upland, Central Poland)

The objectives of the present survey were to formulate a zoocenological analysis of the gastropod communities in clay pit ponds, as well as to determine the relationships between the gastropods and their environments, and to evaluate the water habitats in terms of their ecological-conservation value. The physical and chemical parameters of water, gastropod species and macrophytes occurring in the ponds indicate mesotrophic conditions. Principal Component Analysis (PCA) reveals a correlation between gastropod density and nitrates, a correlation between gastropod density and alkalinity, and additionally shows a correlation between gastropod density and chlorides. The pond surface area, nitrates, chlorides concentrate, alkalinity, and substratum have all affected these gastropod communities. The occurrence of the first permanent population of Ferrissia clessiniana (Jickeli, 1882) was recorded in Poland. Valvata naticina Menke 1845 has become a critically rare species (CR) due to the pollution of water environments. Five other species, e.g. Anisus vorticulus (Troschel, 1834) and Planorbis carinatus O.F. Müller, 1774 are recorded on the Polish Red List of Species. The clay pit ponds of the Ciechanowska Upland, because of their distinctive environmental features, provide a refuge where a number of rare, threatened and alien gastropod species live.     

Two early Eocene vines from south-east England

Small diameter pyritized axes, commonly referred to as 'twigs', of fossil vitaceous and menispermaceous wood from the Lower Eocene, London Clay Formation of south-east England are described here for the first time. The vitaceous twigs, which represent the earliest known occurrence of fossil Vitaceae wood, are characterized by large diameter, solitary vessels, tall wide rays which dilate in the phloem region, scalariform intervessel pits and simple perforation plates. The wood anatomy supports a close relationship to the Vitaceae and in particular the genus Rhoicissus Planch. The menispermaceous twigs are characterized by medium to moderately large vessels, simple perforation plates, alternate intervascular pitting and very broad and high rays. The anatomical characters support a close relationship to the Menispermaceae and in particular the genera Tinomiscium Miers and Coscinium Colebr. However, as these fossil twigs are not exactly similar to any particular genus they have been placed in the organ genus, Vitacexoylon Wheeler and LaPasha and Menispermoxylon Vozenin-Serra, Privé-Gill & Ginsburg, with which, respectively, they have the greatest similarity. These specimens were studied using reflected light- and scanning electron microscopy.     

Novel non-exfoliated clay-nanocomposite materials by in situ co-polymerisation of intercalated monomers: a combinatorial discovery approach

We report the synthesis and qualitative testing of a novel class of clay nanocomposite meterials made by the in situ copolymerisation of small intercalating monomer molecules using combinatorial-style diversity methods. Initial screening was undertaken by treating montmorillonite clay films with combinations of selected additives in aqueous solution. The treated films were assessed for their stability in a qualitative manner based on their response to water. The mechanical stength of these films was also assessed qualitatively. Promising “lead” formulations showed no signs of water-induced swelling and/or exfoliation, while also being flexible and hard. In addition, the interlamellar d-spacings in the treated clay films were measured using X-ray diffraction, where possible; the value of the d-spacing in the treated clays was found to vary significanlty, from 12.7–17.7?Å. The lead formulations were then tested on bulk montmorillonite clay, confirming that the thin film behaviour was representative of that of the bulk. Direct analysis of the treated clays by mass spectrometry using both FAB and MALDITOF did not provide any useful information. However, when the clays were subjected to extraction using chloroform, clear evidence of higher relative moleclar mass species was forthcoming, confirming that polymersation of the additives was occurring. Further supporting evidence was obtained by solid-state NMR anlaysis of treated iron-free (laponite) clay samples, which also revealed extensive polymerisation of the monomers used. Comparison of these data with the results of some simple molecular modelling studies indicates that polymerisation is indeed occurring within the clay galleries.     

Factors affecting growth of Bdellovibrio on Rhizobium

The extent of decline in the population density of Rhizobium sp. exposed to Bdellovibrio was markedly reduced in the presence of montmorillonite, kaolinite or vermiculite but not by a soil clay fraction. Increasing levels of montmorillonite reduced the numbers of vibrios that appeared in a two-membered culture and allowed for greater survival of the rhizobia. Bdellovibrio and not Rhizobium sp. was retained when mixed with the three clay minerals, but no appreciable retention was evident with the soil clay fraction. Suspensions of colloidal soil organic matter protected the hosts from parasitism, although aqueous extracts of soil did not affect the relationship. Cells from old Rhizobium sp. cultures were attacked only after a lag phase, but rhizobia that had been stored were more rapidly lysed than cells tested immediately after removal from the growth medium. The possible significance of these findings to the survival of rhizobia in soils containing Bdellovibrio is discussed.